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Contents

  • PumasCP Learning Path
    • Module 1: Overview to PumasCP
      • Studies
      • PumasCP support
      • Study dashboard
    • Module 2: Study Dashboard
      • Dataset
    • Module 3: Data Transformation
      • Core transformations
      • Reshape
      • Clean
      • Set
      • Join
      • Metadata
    • Module 4: Non-compartmental analysis - Workflow
      • Tasks
      • Mapping
      • Subject Data Review
      • Figures
      • Tables
      • NCA Preferences
      • Custom parameters
      • Explore Subjects
      • Review NCA Results
      • Generating a report

PumasCP Learning Path

Module 1: Overview to PumasCP

Studies

  • Create a study (Video)
  • Import a study (Video)
  • Delete (bulk) a study (Video)

PumasCP support

  • Help via widget (Video)
  • Documentation links (Video)
  • Extending session (Video)

Study dashboard

  • Datasets, tasks and reports (Video)
  • Tasks (Video)
  • Reports (Video)

Module 2: Study Dashboard

Dataset

  • Uploading different file formats (Video)
  • Using example datasets (Video)
  • Edit uploaded file (Video)
  • Transform - Datawrangling (Video)
  • Duplicate (Video)

Module 3: Data Transformation

Core transformations

  • Select columns (Video)
  • Rename (Video)
  • Relocate (Video)
  • Convert (Video)
  • Filter rows (Video)
  • Order by (Video)
  • Group by (Video)
  • Ungroup (Video)
  • Derive (Video)
  • Define Route (Video)
  • Convert Unit (Video)
  • Infer units (Video)
  • Sample rows (Video)
  • Slice Rows (Video)
  • Count (Video)

Reshape

  • Fold (Video)
  • Pivot (Video)

Clean

  • Remove duplicates (Video)
  • Impute (Video)

Set

  • Concat (Video)
  • Union (Video)
  • Intersect (Video)
  • Except (Video)

Join

  • Inner, outer, left, right, cross, semi and anti join (Video)

Metadata

  • Label and Notes (Video)

Module 4: Non-compartmental analysis - Workflow

Tasks

  • Task Overview (Video)
  • Create a task (Video)
  • Choosing an analysis template (Video)
  • Duplicate a task (Video)
  • Create a template task (Video)

Mapping

  • Automapping of columns (Video)
  • Mapping columns for plasma and urine PK data (Video)
  • Grouping variables (Video)
  • Enabling Sparse analysis mode (Video)
  • Specifying LLOQ and BLQ (Video)
  • Error at Step 3 NCA (Video)
  • Correct mapping (Video)

Subject Data Review

  • Study data summary (Video)
  • Listing of concentrations table (Video)
  • Observations vs time plots (Video)
  • Summary observations vs time plots (Video)
  • Subject fit plots (Video)

Figures

  • Formatting default figures (Video)
  • Adding new figures (Video)

Tables

  • Formatting default tables (Video)
  • Adding new tables (Video)

NCA Preferences

  • Regression Method (Video)
  • Threshold (Video)
  • Rules - Overview (Video)
  • BLQ (Video)
  • R2 (Video)
  • AUC % Extrapolated (Video)

Custom parameters

  • Parameters to Summarize (Video)
  • Partial AUC calculation - Part 1 (Video)
  • Partial AUC calculation - Part 2 (Video)

Explore Subjects

  • Navigation of groups (Video)
  • Linear/Log (Video)
  • R2 Flag (Video)
  • Navigation of subjects (Video)
  • Exclude subjects (Video)
  • Exclude data points (Video)
  • Edit start and end for terminal points (Video)
  • Apply notes (Video)

Review NCA Results

  • Raw results vs Transformed results (Video)
  • Ratio table and Summary table (Video)
  • NCA Parameter Listing table (Video)
  • Figures (Video)

Generating a report

  • Create a report by choosing task(s) (Video)
  • Selecting results to be reported (Video)
  • Metadata for report (Video)
  • View/Download/Edit/Remove a report (Video)